Description
In this episode we explore the new features of Seqera's Data Studios and Data Explorer, with Phil Ewels, Rob Newman and Rob Syme from Seqera.
Discover how to use these tools for troubleshooting Nextflow pipelines, tertiary analysis and Nextflow development. We discuss the pain points that led to the creation of Data Studios and how it's designed to allow scientists to interactively and collaboratively work with data and complex workflows, without having to move large datasets around.
Rob Syme wows us with another fantastic practical demonstration, setting up and using Data Studios to write and test a Nextflow pipeline in VSCode running on the cloud in a Data Studio environment, including running the Nextflow CLI with task submission to AWS Batch.
We cover features like session persistence to save work states, and upcoming custom container support for your own specialized applications.
Learn how these tools can enhance your computational biology projects and make seamless cloud integration a reality.
00:00 Channels Podcast 43: Data Studios
00:26 Introductions
01:54 Data Studios
04:51 Move the compute to the data
06:13 Real-time collaboration
06:47 Data Explorer
09:41 Access to public data
10:45 Data Explorer demo
13:56 Data Studios setup
20:17 Session persistance
22:52 Data Studios RStudio demo
28:24 Nextflow development in Data Studios
36:17 Future development
37:01 Custom containers
40:01 Boston Summit demo
44:01 Lifetime management
47:14 Wrap up
In episode 47 of The Nextflow Podcast, Phil Ewels and Ben Sherman discuss the launch of the new Nextflow language server, a significant upgrade providing advanced code intelligence features such as code completion and error hints for VS Code users.
They detail the benefits of formalizing...
Published 11/05/24
In this episode of Channels, the Nextflow podcast, host Geraldine from Seqera and her colleague Ben Sherman dive into the differences and similarities between Nextflow and the Workflow Description Language (WDL). They discuss the origins and development of WDL at the Broad Institute, the...
Published 09/17/24